Will the bank file a case for stoppage after resuming loan payments

I have taken a finance loan from a bank and was paying continuously as it was automatically debited from my salary account associated with the bank.

Due to my pregnancy, I have unpaid leaves and now it's 4 months pending. For 6 months, my salary wasn't credited but every 2.5 months I paid 1 instalment in these 6 months.

Last month, I resumed work and from last month salary started paying again into DIB account and they have taken 1.5-months instalment.

Meanwhile, last week they deposited a cheque which was given during the loan process and it bounced.

So is there any chance a case is filed even though I started paying my instalment again?